A list of tools developed by the CNIO Bioinformatics Unit
The APPRIS database and web services annotate alternative splice variants and select a single variant as the main (principal) isoform.
Rodriguez J. M. et al. 2022. PMID: 34755885
A computational methodology for identifying and treating tumour cell subpopulations with distinct drug responses in single-cell RNA-seq data.
Fustero-Torre C. et al. 2021. PMID: 34911571
A stand-alone and multiplatform application for bisulfite-seq analysis.
Graña O. et al. 2017. PMID: 29211825
A comprehensive, end-to-end Snakemake pipeline for single cell RNA-seq.
García-Jimeno L. et al. PMID: 34788788
A tool for prioritization of drugs capable of modulating the immune system.
Troulé K. et al. 2020. PMID: 32818254
A platform to guide the selection of therapies from the results of genome-wide studies in cancer disease.
Jiménez-Santos M. J. et al. 2023. PMID: 37207338
A method to assess the functional relevance of splice isoforms.
Pozo F. et al. 2021. PMID: 34046593
A method for detecting and targeting cancer genetic dependencies.
Perales-Patón J. et al. 2019. PMID: 31173067
